- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Economy and Business🇬🇧 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- International Relations🇨🇿 NMgr. | Faculty of Social Sciences
- Germanic and North European Studies with specialisation in German Studies with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Hispanian Studies with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Geopolitical Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Czech Language and Literature for Teacher Education🇨🇿 Bc. | Faculty of Arts
- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- French Studies with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in German Studies with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Scandinavian Studies with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Dutch Studies with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Philosophy and History of Science +1🇨🇿 PhD. | Faculty of Science
- Theoretical and Evolutionary Biology🇨🇿 PhD. | Faculty of Science