- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Archaelogy of Prehistory and Middle Ages +1🇨🇿 NMgr. | Faculty of Arts
- Ancient Egypt and the Near East🇨🇿 Bc. | Faculty of Arts
- Bioinformatics🇨🇿 NMgr. | Faculty of Science
- Computer Science with specialisation in Computer Graphics, Vision and Game Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in General Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Programming and Software Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Systems Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Web and Data Oriented Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Artificial Intelligence🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Information Technologies🇨🇿 Bc. | Faculty of Mathematics and Physics
- Teacher Education of Physical Education for Upper Secondary Schools +1🇨🇿 NMgr. | Faculty of Physical Education and Sport
- Physical Education and Sport🇬🇧 NMgr. | Faculty of Physical Education and Sport
- Coach🇨🇿 Bc. | Faculty of Physical Education and Sport
- Catholic Theology🇨🇿 Mgr. | Catholic Theological Faculty
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Czech-German Studies🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Mathematical Structures🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Religious Studies🇨🇿 NMgr. | Faculty of Arts
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- Applied Geography with specialisation in Physical Geography and Geoinformatics🇨🇿 Bc. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science