- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Hispanian Studies with double curriculum study Ibero-American Studies🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Finnish Studies with double curriculum study Ibero-American Studies🇨🇿 NMgr. | Faculty of Arts
- Geography for Teacher Education🇨🇿 Bc. | Faculty of Science
- Ibero-American Studies with double curriculum study Translation Studies with specialisation in Translation Studies: Czech – Spanish🇨🇿 NMgr. | Faculty of Arts
- Ibero-American Studies with double curriculum study History – General History with specialisation in International Relations in the Context of Contemporary History🇨🇿 NMgr. | Faculty of Arts
- Sociology with specialisation in Sociology🇨🇿 Bc. | Faculty of Arts
- Sociology🇨🇿 NMgr. | Faculty of Arts