- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Botany with specialisation in Bryology and lichenology🇨🇿 NMgr. | Faculty of Science
- Botany with specialisation in Mycology🇨🇿 NMgr. | Faculty of Science
- Ecology with specialisation in Terrestrial Ecology🇨🇿 NMgr. | Faculty of Science
- Zoology with specialisation in Animal Evolutionary Genetics🇨🇿 NMgr. | Faculty of Science
- Zoology with specialisation in Invertebrate Zoology🇨🇿 NMgr. | Faculty of Science
- Zoology with specialisation in Entomology🇨🇿 NMgr. | Faculty of Science
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Asian Studies with specialisation in Japanese Studies🇨🇿 Bc. | Faculty of Arts
- Computer Science - Discrete Models and Algorithms🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science - Theoretical Computer Science🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Political Science and International Relations🇨🇿 Bc. | Faculty of Social Sciences
- Political Science and Public Policy🇨🇿 Bc. | Faculty of Social Sciences
- Sociology a Social Policy🇨🇿 Bc. | Faculty of Social Sciences
- Sociology with specialisation in Social Anthropology🇨🇿 Bc. | Faculty of Social Sciences
- Sociology with specialisation in Studies of Contemporary Societies🇨🇿 Bc. | Faculty of Social Sciences
- Social Sciences🇬🇧 Bc. | Faculty of Social Sciences