- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Earth Sciences🇨🇿 Bc. | Faculty of Science
- Geography for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Physical Geography and Geoecology🇨🇿 NMgr. | Faculty of Science
- Geopolitical Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Geography for Teacher Education with double curriculum study History for Teacher Education🇨🇿 Bc. | Faculty of Science
- Geography for Teacher Education🇨🇿 Bc. | Faculty of Science
- Applied Geography with specialisation in Social Geography and Geoinformatics🇨🇿 Bc. | Faculty of Science
- Geography for Teacher Education with double curriculum study Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Religious Studies🇨🇿 Bc. | Faculty of Arts
- Geography and Cartography🇨🇿 Bc. | Faculty of Science
- Applied Geography with specialisation in Physical Geography and Geoinformatics🇨🇿 Bc. | Faculty of Science
- Political Science🇨🇿 NMgr. | Faculty of Social Sciences
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Chemistry for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Bioinformatics🇨🇿 Bc. | Faculty of Science