- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Environmental Protection🇨🇿 Bc. | Faculty of Science
- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Physical Chemistry with specialisation in Biophysical Chemistry🇨🇿 NMgr. | Faculty of Science
- Physical Chemistry with specialisation in Physical chemistry🇨🇿 NMgr. | Faculty of Science
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Education of Chemistry for Upper Secondary Schools with double curriculum study Teacher Education of Physics for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Physics for Upper Secondary Schools with double curriculum study Teacher Education of Mathematics for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geology with specialisation in Mineralogy and Crystallography🇨🇿 NMgr. | Faculty of Science
- Geology with specialisation in Geochemistry🇨🇿 NMgr. | Faculty of Science
- Geology with specialisation in Geoarchaeology🇨🇿 NMgr. | Faculty of Science
- Laboratory diagnostics in health care +1🇨🇿 Bc. | Faculty of Pharmacy in Hradec Králové
- Pharmacy🇨🇿 Mgr. | Faculty of Pharmacy in Hradec Králové
- Chemistry🇨🇿 Bc. | Faculty of Science
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences