- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geoinformatics, Cartography and Remote Sensing🇨🇿 NMgr. | Faculty of Science
- History of Christian Art🇨🇿 NMgr. | Catholic Theological Faculty
- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- English and American Studies🇨🇿 Bc. | Faculty of Arts
- Czech-German Studies🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Physical Education and Sport🇬🇧 NMgr. | Faculty of Physical Education and Sport
- Teacher Training for Nursery Schools +1🇨🇿 Bc. | Faculty of Education
- Philosophy in Jewish and Christian Contexts with double curriculum study Jewish Studies🇨🇿 NMgr. | Hussite Theological Faculty
- Philosophy in Jewish and Christian Contexts with double curriculum study Hussite Theology🇨🇿 NMgr. | Hussite Theological Faculty
- Hussite Theology with double curriculum study Philosophy in Jewish and Christian Contexts🇨🇿 NMgr. | Hussite Theological Faculty
- Sociology with specialisation in Sociology, Public and Politics🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Social Anthropology and Qualitative Research🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Applied Research and Its Methodology🇨🇿 NMgr. | Faculty of Social Sciences
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- History of Art🇨🇿 NMgr. | Faculty of Arts
- Computer Science - Theory of Computing, Discrete Models and Optimization +1🇨🇿 PhD. | Faculty of Mathematics and Physics
- History of Ancient Civilization +1🇨🇿 PhD. | Faculty of Arts
- Military Physical Education, Physical Education and Sport for Teacher Education +1🇨🇿 Bc. | Faculty of Physical Education and Sport