- General Medicine🇨🇿 Mgr. | Third Faculty of Medicine
- Physiotherapy🇨🇿 Bc. | Third Faculty of Medicine
- Dental Hygiene🇨🇿 Bc. | Third Faculty of Medicine
- Intensive Care🇨🇿 NMgr. | Third Faculty of Medicine
- Nutritional Therapy🇨🇿 Bc. | Third Faculty of Medicine
- General Nursing🇨🇿 Bc. | Third Faculty of Medicine
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- History🇨🇿 Bc. | Faculty of Arts
- History – Economic and Social History🇨🇿 NMgr. | Faculty of Arts
- Political Science🇨🇿 NMgr. | Faculty of Social Sciences
- Central European Studies with specialisation in Romani Studies🇨🇿 NMgr. | Faculty of Arts
- History of Art +1🇨🇿 NMgr. | Faculty of Arts
- History of Christian Art🇨🇿 NMgr. | Catholic Theological Faculty