Chromosomal aberrations are the most commonly known cause of mental retardation. Standard cytogenetic banding techniques hold resolution limits of 5 - 8 Mb, and thus are not powerful enough to detect chromosomal rearrangements below 5 Mb in size.
It is for this reason these types are referred to as "cryptic" rearrangements. Cryptic rearrangements were scanned using the multiplex ligation probe amplification method in a cohort of 64 probands with mental retardation or developmental delays in combination with at least one of the following symptoms: hypotonia after birth, congenital anomalies, or face dysmorphisms; but without a positive cytogenetic finding.
The study contributes to the knowledge of microdeletion syndromes and helps disclose their natural phenotypic variability. In total, 10 positives (16 %) were detected, particularly 3 duplications and 6 different deletions, 1 of these in 2 probands.
Besides the well-characterized syndromes, less-often described rearrangements with ambiguous phenotype associations were also detected. Some rearrangements, particularly duplications, are associated with vague phenotypes; and their frequency could be underestimated.