We sequenced the complete mitochondrial genome of the Madagascar ground gecko Paroedura picta (Squamata: Gekkonidae). The mitogenome is 17 220 base pairs long and conforms to the typical vertebrate gene composition and arrangement, i.e. 13 protein-coding genes, 22 tRNA genes, 2 ribosomal RNA genes and 1919 bp long control region.
We reconstructed phylogenetic relationships of P. picta and representatives of nine other genera from the family Gekkonidae and calculated mean p-distances for all 13 protein-coding mitochondrial genes. The lowest mean p-distances were found in cytochrome oxidase subunit I and III genes (COI and COIII) indicating their usefulness for elucidating deeper phylogenetic relationships.