Estimation of electron absorption spectra and lifetime of the two lowest singlet excited states of pyrimidine nucleobases and their derivatives
Abstrakt
Vertical absorption spectra of selected molecules (pyrimidine nucleobases and 5-azacytosin, 2-amino-1,3,5-triazine, 2,4-diamino-1,3,5-triazine, 2,4,6-triamino-1,3,5-triazine, and s-triazine) were performed using TD-DFT, post-HF, and semiempirical OM2/MNDO methods. From comparing a relatively large set of functionals from the different rungs of Jacob's DFT ladder, the important role of the exact exchange interaction is demonstrated.
TD-DFT results with the omega B2GP-PLYP functional (and a few others) are comparable with the post-HF methods. An important finding is also a good accuracy of the semiempirical OM2 approximation, which is used for estimations of lifetimes of the excited states for the same set of molecules.
The lifetimes' determination is based on a stochastical treatment of a swarm of MD trajectories. The time-dependent Schrodinger equation is solved for the electronic degrees of freedom while the dynamics of nuclei is treated classically in each trajectory step applying Tully's fewest switch algorithm.
The probability of individual states in time is determined and compared with both experimental and computational studies. Our results are in fair accord with available experiments.
The nucleobases relatively quickly deactivate - all the relaxation times are below 0.5 ps (in very good accord with measured values). Much longer lifetimes (a few hundred ps) were obtained for other molecules: 5-azacytosin, 2,4-diamino-1,3,5-triazine, and 2,4,6-triamino-1,3,5-triazine.
Also, in agreement with experimental data, 2-amino-1,3,5-triazine returns to the ground state on a nanosecond scale. (C) 2021 Elsevier B.V. All rights reserved.