- Applications of Structural Bioinformatics for the Structural Genomic EraPublication without faculty affiliation
- SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm2011 | Faculty of Mathematics and Physics
- Efficient RNA pairwise structure comparison by SETTER method2012 | Faculty of Mathematics and Physics
- MultiSETTER - Multiple RNA Structure Similarity Algorithm2013 | Faculty of Mathematics and Physics
- Multiple 3D RNA Structure Superposition Using Neighbor Joining2015 | Faculty of Mathematics and Physics
- P2RANKPublication without faculty affiliation
- On the Effectiveness of Distances Measuring Protein Structure Similarity2009 | Faculty of Mathematics and Physics
- Modification of VARNA appletPublication without faculty affiliation
- P2RANK: knowledge-based ligand binding site prediction using aggregated local features2015 | Faculty of Mathematics and Physics
- Functional analysis of phospholipase D delta family in tobacco pollen tubes2020 | Faculty of Science, Central Library of Charles University
- P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure2018 | Faculty of Mathematics and Physics