- The Atlas of the Human Body2003 | First Faculty of Medicine
- Using Historical Atlas of Towns in the Classroom - Part 22016 | Faculty of Science
- Atlas of Ophthalmology2008 | First Faculty of Medicine
- The Atlas2005 | Faculty of Science
- Rare B-decays at ATLAS2006 | Faculty of Mathematics and Physics
- New climate atlas of Czechia2007 | Publication without faculty affiliation
- Illustrated cloud atlas2002 | Publication without faculty affiliation
- School atlas of contemporary world2011 | Faculty of Science
- Atlas of Zygomycetes on webPublication without faculty affiliation
- Road Atlas of Europe2001 | Publication without faculty affiliation
- Satellite Atlas of the Pyramids +12006 | Faculty of Arts
- Higgs physics with ATLAS2010 | Faculty of Mathematics and Physics
- The Landscape Atlas of the Czech Republic2008 | Faculty of Science
- Brain Cuts, atlasPublication without faculty affiliation
- Potential of rare B-decays in ATLAS2007 | Faculty of Mathematics and Physics
- A literary atlas of EuropePublication without faculty affiliation
- Comprehensive Atlas of EchocardiographyPublication without faculty affiliation
- Enjoy The Landscape Atlas of the Czech Republic2008 | Faculty of Science
- Atlas of the ortodontic anomalies2008 | Third Faculty of Medicine
- Highlights from the ATLAS experiment2021 | Faculty of Mathematics and Physics
- Recent Results from ATLAS: Onia, Heavy-Flavor, and More2020 | Faculty of Mathematics and Physics
- The Demographic Atlas of the Slovak Republic2015 | Faculty of Science
- The First World Football Atlas2002 | Publication without faculty affiliation
- The Atlas of Clouds2008 | Faculty of Arts
- The ATLAS Simulation Infrastructure2010 | Faculty of Mathematics and Physics
- School atlas of contemporary world - digital versionPublication without faculty affiliation
- Academic Atlas of Czech History2015 | Faculty of Social Sciences
- Across the Great Atlas without a map.1993 | Faculty of Science
- Atlas of Interventional CardiologyPublication without faculty affiliation